>AGAP004711-PA

gnl|CDD|35562 KOG0341, KOG0341, KOG0341, DEAD-box protein abstra...   918   0.0  
gnl|CDD|35552 KOG0331, KOG0331, KOG0331, ATP-dependent RNA helic...   346   6e-096
gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helic...   323   4e-089
gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helic...   311   2e-085
gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helic...   303   3e-083
gnl|CDD|35555 KOG0334, KOG0334, KOG0334, RNA helicase [RNA proce...   282   1e-076
gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helic...   270   5e-073
gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helic...   261   2e-070
gnl|CDD|35559 KOG0338, KOG0338, KOG0338, ATP-dependent RNA helic...   251   2e-067
gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helic...   244   3e-065


==> gnl|CDD|35562 KOG0341, KOG0341, KOG0341, DEAD-box protein abstrakt [RNA
           processing and modification].
          Length = 610

 Score =  918 bits (2374), Expect = 0.0
 Identities = 416/610 (68%), Positives = 499/610 (81%), Gaps = 10/610 (1%)

Query: 6   VKRYRRDSQKSE--DEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTVGKSSSENEH 63
            +R R++ + SE  DE+D  +VPYV V+ER+ Q   KL +             S SE E 
Sbjct: 4   RRRKRQEEEDSEGDDEDDEDYVPYVPVQERRAQVHRKLLQRQVKAPTEEEQEDSESEREK 63

Query: 64  EEESTEESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKKALMGVA 123
           +E+  +   G + N SLLDQHTELK+ AEA KISA EKQL EEE+I+ESVA+ KALM VA
Sbjct: 64  KEDDKQ---GEEANKSLLDQHTELKETAEA-KISASEKQLMEEEEIMESVADGKALMSVA 119

Query: 124 ELAKGIQYEDPIKTSWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREMKLPK 183
           ELAKGI YE+PIKT+W PPR+I    E + E +R++L IL EG+++PPP+++F+EMK PK
Sbjct: 120 ELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPK 179

Query: 184 AVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRL 243
            +L  L K+ I  P+PIQVQG+P VL+GRD+IGIAFTGSGKTLVFVLP+IMF LEQE+ L
Sbjct: 180 PLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239

Query: 244 PFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAII 303
           PF + EGPYGLIICPSRELA+QTHDII+ Y   LQEAG PE+R++L IGGVPV + + ++
Sbjct: 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV 299

Query: 304 QQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQ 363
           ++G HI+VATPGRLMDML KK+++LD CRYL +DEADRMIDMGFE+D+RTIFS+FKGQRQ
Sbjct: 300 RRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQ 359

Query: 364 TLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLECLQK 423
           TLLFSATMPKKIQNFAKSALVKPVT+NVGRAGAAS++V Q+VEYVKQEAK+VYLLECLQK
Sbjct: 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK 419

Query: 424 TPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATD 483
           T PPVLIFAEKK DVD IHEYLLLKGVEAVAIHGGKDQE+R+ ++E+FR  +KDVLVATD
Sbjct: 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD 479

Query: 484 VASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKH 543
           VASKGLDFPD+QHVINYDMP++IENYVHRIGRTGRSG  G+ATTFINK  E+ VLLDLKH
Sbjct: 480 VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKH 539

Query: 544 LLIEAQQKVPPFLGELCSETEK--YADLGD--GCSYCGGLGHRITECPKLEAVQSKQASN 599
           LL EA+Q+VPP L EL    E+   AD G   GC+YCGGLGHRIT+CPKLEA Q+KQ SN
Sbjct: 540 LLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDCPKLEAQQNKQISN 599

Query: 600 IGRRDYLSNT 609
           IGR+DYL + 
Sbjct: 600 IGRKDYLGSG 609



==> gnl|CDD|35552 KOG0331, KOG0331, KOG0331, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 519

 Score =  346 bits (888), Expect = 6e-096
 Identities = 171/448 (38%), Positives = 251/448 (56%), Gaps = 18/448 (4%)

Query: 141 PPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREMKLPKAVLAALAKRNIKKPSPI 200
           P      +      K+ E++  L+           F+E+ L + ++ AL ++  +KP+PI
Sbjct: 58  PKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEELMKALKEQGFEKPTPI 117

Query: 201 QVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRLPFIKREGPYGLIICPSR 260
           Q QG P  L+GRDL+GIA TGSGKTL ++LP I+    ++ +L   + +GP  L++ P+R
Sbjct: 118 QAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKL--SRGDGPIVLVLAPTR 175

Query: 261 ELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLMDM 320
           ELA Q     + + +         +R+    GG P    +  +++G  +++ATPGRL+D+
Sbjct: 176 ELAVQVQAEAREFGK------SLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDL 229

Query: 321 LDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFS-YFKGQRQTLLFSATMPKKIQNFA 379
           L++  + L    YL +DEADRM+DMGFE  +R I S   +  RQTL+FSAT PK+++  A
Sbjct: 230 LEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLA 289

Query: 380 KSALVKPVTINVGRA--GAASMNVTQDVEYVKQEAKVVYLLECLQK----TPPPVLIFAE 433
           +  L  P+ INVG      A+ N+ Q VE   + AK+  L + L+     +   V+IF E
Sbjct: 290 EDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCE 349

Query: 434 KKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPD 493
            K+  D +   L  KG  AVAIHG K Q ER   ++ FR  +  VLVATDVA++GLD PD
Sbjct: 350 TKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409

Query: 494 VQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVP 553
           V  VINYD P+++E+YVHRIGRTGR+G KG A TF      + +  +L  +L EA Q VP
Sbjct: 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK-LARELIKVLREAGQTVP 468

Query: 554 PFLGELCSETEKYADLGDGCSYCGGLGH 581
           P L E        +    G  + G    
Sbjct: 469 PDLLEY--ARVSGSGGNMGGCFGGPRSE 494



==> gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 482

 Score =  323 bits (829), Expect = 4e-089
 Identities = 170/417 (40%), Positives = 245/417 (58%), Gaps = 25/417 (5%)

Query: 166 GENVPPPLRTFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKT 225
           G +VPP + TF E  L +A+   + +    KP+P+Q   IP +  GRDL+  A TGSGKT
Sbjct: 66  GRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKT 125

Query: 226 LVFVLPIIMFCLEQELRLPFIKREGPYG--LIICPSRELAKQTHDIIQYYCRHLQEAGMP 283
             F++PII + L++          G Y   LI+ P+REL  Q ++      R    + + 
Sbjct: 126 AAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN----EARKF--SYLS 179

Query: 284 EIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMI 343
            +++V+  GG  +   +  I++G  I+VATPGRL D++++  ++LD C++L +DEADRM+
Sbjct: 180 GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRML 239

Query: 344 D-MGFEEDVRTIFSYF----KGQRQTLLFSATMPKKIQNFAKSALVKP-VTINVGRAGAA 397
           D MGFE  +R I        K  RQTLLFSAT PK+IQ  A   L    + + VGR G+ 
Sbjct: 240 DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299

Query: 398 SMNVTQDVEYVKQEAKVVYLLECLQKTPPP----------VLIFAEKKQDVDAIHEYLLL 447
           S N+TQ + +V +  K   LL+ L K   P           L+F E K+  D +  +L  
Sbjct: 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS 359

Query: 448 KGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIE 507
            G  A +IHG + Q ER +++  FRN +  VLVAT+VA++GLD P+V+HVINYDMP DI+
Sbjct: 360 NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID 419

Query: 508 NYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFLGELCSETE 564
           +YVHRIGRTGR G+ G AT+F N+  +  +   L  +L EA Q+VP +L EL  E E
Sbjct: 420 DYVHRIGRTGRVGNGGRATSFFNEKNQN-IAKALVEILTEANQEVPQWLSELSRERE 475



==> gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helicase subunit [RNA
           processing and modification].
          Length = 673

 Score =  311 bits (797), Expect = 2e-085
 Identities = 191/537 (35%), Positives = 281/537 (52%), Gaps = 55/537 (10%)

Query: 50  EASTVGKSSSENEHEEESTEESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKI 109
           +AS    +     +      + +GR F   +  +    +K  ++K    +EK+  E+EK 
Sbjct: 132 DASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKE---QKKEKSKYGEMMEKRRTEDEKE 188

Query: 110 LESVAEKKALMGVAELAKGIQYEDPIKTSWTPPRYILSKPESRHEKI-REKLRILTEGEN 168
            E    +K    V +      ++D     W+     L++   R  +I RE   I  +G  
Sbjct: 189 QEEELLQK----VCKKEAKSGWDD---RHWSEKV--LAEMTERDWRIFREDYNISIKGGR 239

Query: 169 VPPPLRTFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVF 228
           +P PLR + E   P  +L+ + K   K+P+PIQ Q IP  L  RD IG+A TGSGKT  F
Sbjct: 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAF 299

Query: 229 VLPIIMFCLEQELRLPFIKR-----EGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMP 283
           ++P++++       LP + R     EGPY +I+ P+RELA+Q  +    + + L      
Sbjct: 300 LIPLLIWIS----SLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG----- 350

Query: 284 EIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMI 343
            IRTV  IGG+   +    +  G  I++ATPGRL+D L+ + + L+ C Y+ +DEADRMI
Sbjct: 351 -IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409

Query: 344 DMGFEEDV-------------------------RTIFSYFKGQRQTLLFSATMPKKIQNF 378
           DMGFE DV                         R  FS  K  RQT++F+ATMP  ++  
Sbjct: 410 DMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERL 469

Query: 379 AKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLECL-QKTPPPVLIFAEKKQD 437
           A+S L +PV + +G AG  +  V Q VE V ++ K   L+E L     PP++IF   K+ 
Sbjct: 470 ARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKG 529

Query: 438 VDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHV 497
            DA+ + L   G +   +HGGK QE+R  ++  FR    D+LVATDVA +G+D P+V  V
Sbjct: 530 ADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLV 589

Query: 498 INYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPP 554
           INYDM   IE+Y HRIGRTGR+G  G A +F+  A +  V  DLK  L E+ +   P
Sbjct: 590 INYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA-DTAVFYDLKQALRESVKSHCP 645



==> gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 731

 Score =  303 bits (778), Expect = 3e-083
 Identities = 173/436 (39%), Positives = 241/436 (55%), Gaps = 13/436 (2%)

Query: 127 KGIQYEDPIKTSWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREMKLPKAVL 186
             I YE   K  +     I    +     +R  L +   G + P P+ +F      K ++
Sbjct: 176 SEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLM 235

Query: 187 AALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRLPFI 246
            A+ K   +KP+PIQ Q +P  L+GRD+IGIA TGSGKT  F+ P+I+  ++Q    P  
Sbjct: 236 TAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP-- 293

Query: 247 KREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAIIQQG 306
             EGP G+I+ P+RELA Q     + + +         +R V   GG    +    +++G
Sbjct: 294 -GEGPIGVILVPTRELASQIFSEAKKFGKAYG------LRVVAVYGGGSKWEQSKELKEG 346

Query: 307 AHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQTLL 366
           A I+VATPGRL+DM+  K   L    YL +DEADRM DMGFE  VR+I  + +  RQTLL
Sbjct: 347 AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLL 406

Query: 367 FSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYV-KQEAKVVYLLECLQK-- 423
           FSAT  KKI+  A+  L  PV +  G  G A+ ++TQ V     +E K+ +LL  L +  
Sbjct: 407 FSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS 466

Query: 424 TPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATD 483
           +   VLIF  KK D + I   L LKG     +HG KDQ ER   +  F+ + K VLVATD
Sbjct: 467 SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATD 526

Query: 484 VASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKH 543
           VA++GLD P ++ V+NYD   DI+ + HRIGRTGR+G KG+A T + +   +F    L +
Sbjct: 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFA-GHLVN 585

Query: 544 LLIEAQQKVPPFLGEL 559
            L  A Q VP  L +L
Sbjct: 586 NLEGAGQNVPDELMDL 601



==> gnl|CDD|35555 KOG0334, KOG0334, KOG0334, RNA helicase [RNA processing and
           modification].
          Length = 997

 Score =  282 bits (722), Expect = 1e-076
 Identities = 181/531 (34%), Positives = 270/531 (50%), Gaps = 19/531 (3%)

Query: 58  SSENEHEEESTEESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKK 117
           SS ++ +     +   +  N  L     E   +    +   +               + K
Sbjct: 249 SSHSKAQVVEVSKDARKGLNPKLSGFVIEPGLVNGDNEEVELNGSFDNRNAAKNMNLKAK 308

Query: 118 ALMGVAELAKGIQYEDPIKTSWTPPRYILSKPESRHEKIREKL-RILTEGENVPPPLRTF 176
             +   + +K I YE   K  +   R I     +  ++ R +L  I  +G+  P P+ ++
Sbjct: 309 KNLIQVDHSK-ISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSW 367

Query: 177 REMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFC 236
            +  L   +L  L K   +KP+PIQ Q IPA+++GRD+IG+A TGSGKTL F+LP+I   
Sbjct: 368 TQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHI 427

Query: 237 LEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPV 296
            +Q    P  + +GP  LI+ P+RELA Q H  ++ + + L       IR V   GG  +
Sbjct: 428 KDQR---PLEEGDGPIALILAPTRELAMQIHREVRKFLKLL------GIRVVCVYGGSGI 478

Query: 297 NDAIAIIQQGAHIMVATPGRLMDML---DKKLVTLDVCRYLCMDEADRMIDMGFEEDVRT 353
           +  IA +++GA I+V TPGR++D+L     ++  L    YL +DEADRM DMGFE  +  
Sbjct: 479 SQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538

Query: 354 IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEA- 412
           I    +  RQT+LFSAT P+ ++  A+  L KPV I VG        VTQ V     E  
Sbjct: 539 ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENE 598

Query: 413 KVVYLLECL--QKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVES 470
           K + LLE L  +      +IF +K++  DA+   L   G    ++HGG DQ +R  ++E 
Sbjct: 599 KFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIED 658

Query: 471 FRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFIN 530
           F+N   ++LVAT V ++GLD  ++  V+NYD P+  E+YVHR+GRTGR+G KG A TFI 
Sbjct: 659 FKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFIT 718

Query: 531 KATEQFVLLDLKHLLIEAQQKVPPFLGELCSE-TEKYADLGDGCSYCGGLG 580
               ++   DL   L  ++Q VP  L  L      K    G      GG G
Sbjct: 719 PDQLKYA-GDLCKALELSKQPVPKLLQALSERFKAKQKAGGSQVHGGGGFG 768



==> gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 476

 Score =  270 bits (691), Expect = 5e-073
 Identities = 122/359 (33%), Positives = 197/359 (54%), Gaps = 16/359 (4%)

Query: 175 TFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIM 234
           +F ++ +   +L A  +   KKP+ IQ + IP  L GRD+IG+A TGSGKT  F LPI+ 
Sbjct: 62  SFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQ 121

Query: 235 FCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGV 294
             L++         +  + L++ P+RELA+Q  +  +     +       +R  + +GG+
Sbjct: 122 RLLQE--------PKLFFALVLTPTRELAQQIAEQFEALGSGIG------LRVAVLVGGM 167

Query: 295 PVNDAIAIIQQGAHIMVATPGRLMDMLDK-KLVTLDVCRYLCMDEADRMIDMGFEEDVRT 353
            +      + +  HI+VATPGRL D L+  K  +L+  ++L +DEADR++DM FEE++  
Sbjct: 168 DMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDY 227

Query: 354 IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAK 413
           I      +RQT LFSATM KK++   +++L  PV + V        ++ Q   +V  + K
Sbjct: 228 ILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK 287

Query: 414 VVYLLECLQKTPP-PVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFR 472
             YL+  L +     V++F         +   L   G +A+ +HG   Q +R  ++  F+
Sbjct: 288 DTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFK 347

Query: 473 NQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINK 531
              + +LV TDVAS+GLD P V  V+NYD+P   ++Y+HR+GRT R+G  G A T + +
Sbjct: 348 AGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406



==> gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 629

 Score =  261 bits (669), Expect = 2e-070
 Identities = 169/552 (30%), Positives = 276/552 (50%), Gaps = 30/552 (5%)

Query: 22  NSFVPYVSVKERKKQQLLKLGRIVQLTAEASTVGKSSSENEHEEESTEESWGRKFNISLL 81
           N     + + +   +  + +  I  +  +A        + +    S E   G  ++    
Sbjct: 74  NDTNTRIQIIKCDLEVKVTIFGINHMRKKAKASIDRGQDKDERYNSEERYDGAGYDRYKG 133

Query: 82  DQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKKALMGVAELAKGIQYEDPIKTSWTP 141
           +  T  +K+AE + +   E   +   K      EK     +  + K    E    ++ + 
Sbjct: 134 NMLTLNQKVAEPEPLIDWESIREARLK-----DEKFKWAKLPPIKKNFYKESNETSNLSK 188

Query: 142 PRYILSKPESRHEKIREKLRILTEGEN--VPPPLRTFRE-MKLPKAVLAALAKRNIKKPS 198
            +      E R E        L EGE   +P P+ TF +  +    V+  + K   +KP+
Sbjct: 189 EQLQ----EWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPT 244

Query: 199 PIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRLPFIKREGPYGLIICP 258
           PIQ Q  P +L G DLIG+A TG+GKTL F+LP  +    Q  R    +R GP  L++ P
Sbjct: 245 PIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTP 302

Query: 259 SRELAKQTH-DIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRL 317
           +RELA Q   ++ +Y    L        ++V   GG   N+ I  +++G  I++ATPGRL
Sbjct: 303 TRELALQIEGEVKKYSYNGL--------KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRL 354

Query: 318 MDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQN 377
            D+    ++ L    YL +DEADRM+DMGFE  +R I    +  RQT++ SAT P+ ++ 
Sbjct: 355 NDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRR 414

Query: 378 FAKSALVKPVTINVGRAGAASMN-VTQDVEYVKQEAKVVYLLECLQKTPP--PVLIFAEK 434
            A+S L +P+ + VG     ++  V Q++       K+  +   +        V+IF  +
Sbjct: 415 LAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSR 474

Query: 435 KQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDV 494
           K   D +     LKG+ + ++HG ++Q +R  ++E F++ E  +LVATD+AS+GLD PD+
Sbjct: 475 KVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534

Query: 495 QHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPP 554
            HV NYD P +IE YVHR+GRTGR+G  G + +F+ +  +  +  +L  +L  A+Q+VP 
Sbjct: 535 THVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTR-NDWSMAEELIQILERAEQEVPD 593

Query: 555 FLGELCSETEKY 566
              EL    E+Y
Sbjct: 594 ---ELVRMAERY 602



==> gnl|CDD|35559 KOG0338, KOG0338, KOG0338, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 691

 Score =  251 bits (642), Expect = 2e-067
 Identities = 133/364 (36%), Positives = 203/364 (55%), Gaps = 24/364 (6%)

Query: 175 TFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIM 234
           +F+ M L + +L A +    KKP+PIQV  IP  L G+D+   A TGSGKT  F LPI+ 
Sbjct: 182 SFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILE 241

Query: 235 FCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGV 294
             L +  ++   +      L++ P+RELA Q H + +   +         I   LA+GG+
Sbjct: 242 RLLYRPKKVAATRV-----LVLVPTRELAIQVHSVTKQLAQFTD------ITVGLAVGGL 290

Query: 295 PVNDAIAIIQQGAHIMVATPGRLMDML-DKKLVTLDVCRYLCMDEADRMIDMGFEEDVRT 353
            +    A+++    I++ATPGRL+D L +     LD    L +DEADRM++ GF +++  
Sbjct: 291 DLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNE 350

Query: 354 IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVK---- 409
           I       RQT+LFSATM +++++ A  +L KPV I V      +  +TQ  E+++    
Sbjct: 351 IIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQ--EFIRIRPK 408

Query: 410 ----QEAKVVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERY 465
               +EA +  L+    +     ++F   K+    +   L L G++A  +HG   QE+R 
Sbjct: 409 REGDREAMLASLITRTFQDR--TIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRL 466

Query: 466 RSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLA 525
            S+E F+ +E DVL+ATDVAS+GLD   VQ VINY MP  IE+Y+HR+GRT R+G  G +
Sbjct: 467 ESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRS 526

Query: 526 TTFI 529
            T +
Sbjct: 527 VTLV 530



==> gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 567

 Score =  244 bits (624), Expect = 3e-065
 Identities = 132/385 (34%), Positives = 206/385 (53%), Gaps = 17/385 (4%)

Query: 178 EMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCL 237
              L   +L AL +   +K +P+Q   IP +L  +D++  A TGSGKTL F+LP++    
Sbjct: 10  APPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIY 69

Query: 238 EQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVN 297
            +E + P         LII P+RELA+Q  ++ Q +  HL     P +   L +GG  V 
Sbjct: 70  RREAKTP---PGQVGALIISPTRELARQIREVAQPFLEHL-----PNLNCELLVGGRSVE 121

Query: 298 DAIAII-QQGAHIMVATPGRLMDMLDKKLVTLDV--CRYLCMDEADRMIDMGFEEDVRTI 354
           + I    ++G +I+V TPGRL+D+L ++   L       L +DEADR++DMGFE  V TI
Sbjct: 122 EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181

Query: 355 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEA-- 412
            S+   QR+T LFSAT  +++++ A++ L  PV ++V     ++   +  +EY+  EA  
Sbjct: 182 LSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE 241

Query: 413 KVVYLLECL-QKTPPPVLIFAEKKQDVDAIHEYL--LLKGVEAVAIHGGKDQEERYRSVE 469
           K+  L+  L        ++F      V+   +    LLK  E  +IHG   Q+ R + +E
Sbjct: 242 KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLE 301

Query: 470 SFRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFI 529
           +FR     VL  TDVA++GLD P +  V+ +D P D  ++VHR GRT R+G +G A  F+
Sbjct: 302 AFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361

Query: 530 NKATEQFV-LLDLKHLLIEAQQKVP 553
           N   E +V  L +K  +   +    
Sbjct: 362 NPREEAYVEFLRIKGKVELERIDTE 386