>AGAP011110-PA

gnl|CDD|37285 KOG2074, KOG2074, KOG2074, RNA polymerase II trans...   287   3e-078
gnl|CDD|37901 KOG2690, KOG2690, KOG2690, Uncharacterized conserv...    35   0.024
gnl|CDD|39020 KOG3816, KOG3816, KOG3816, Cell differentiation re...    30   0.90 


==> gnl|CDD|37285 KOG2074, KOG2074, KOG2074, RNA polymerase II transcription
           initiation/nucleotide excision repair factor TFIIH,
           subunit TFB1 [Transcription, Replication, recombination
           and repair].
          Length = 548

 Score =  287 bits (736), Expect = 3e-078
 Identities = 154/328 (46%), Positives = 207/328 (63%), Gaps = 15/328 (4%)

Query: 1   MTTTREDVLLQMGEVRFKKGDGTLYVMNERIAWIAEHRDTVAVSHRFQDIKMQKISPEGK 60
           M T+ E+VLL + +VR KK DG LY+M ERIAW+ E +   ++   F DIK QK SPEGK
Sbjct: 1   MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWVPEGKSPFSLKVMFHDIKCQKESPEGK 60

Query: 61  PKVQLQVVLHDGNSSTFHFVNRLGPPAQMADRDKVKEL----LQQLLPNFRRKID-KELE 115
            K+QLQ+VL  G++  F F N       + +RD VK+     LQ+LLPNF  K   KELE
Sbjct: 61  AKIQLQLVLKQGDTHNFSFPNE---NDAVKERDAVKDTKALALQELLPNFESKATAKELE 117

Query: 116 EKNRILTENPSLLQLYKDLVITQVLTSEEFWARHAKEYMNKE--QTVRQDIGVSGAFLAD 173
            K  +L ENP L +LYK+LV+++VL+ EEFW+      +  +   T  Q +G+  A L+ 
Sbjct: 118 LKQSLLQENPVLFKLYKELVVSKVLSPEEFWSTR-LNLLRADASSTSNQQVGIYNAVLST 176

Query: 174 IKPQTDGCNGLRYNLTADIIECIFKTYPAVKRKHTDNVPAKMTEAEFWTKFFQSHYFHRD 233
           IKPQTDGCNG++ NLT++IIE IF+TYPAVK+K+ +NVP  MTE EFWT+FFQSHYFHR 
Sbjct: 177 IKPQTDGCNGVKVNLTSEIIEQIFETYPAVKKKYAENVPHNMTEKEFWTRFFQSHYFHRL 236

Query: 234 RIVAGGTKDIFTECGKID---DQQLRQSVQENLGDPLLDIRAFEDNTLEEGFCSSATAKQ 290
           R      KD   EC  ID   +++L + V E + +PLLD+ A +D  L+EG+  S+    
Sbjct: 237 RGNTISPKDPSAECADIDLFPEEELTKMVDEKIKNPLLDLDANDDKPLDEGYGISSVPSA 296

Query: 291 QTVNSGN-IVHQSMIKRFNQHSFSVLKT 317
               S N     ++IKRFN+ S  VL  
Sbjct: 297 SNSESQNDNSKAALIKRFNRLSEKVLAA 324



 Score = 78.2 bits (192), Expect = 3e-015
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 510 AAVSALGDLSPGGALMRGFQEQSLAQLVPPDIEKEVRNLYLSLLELLKEFWKCFPPTTPQ 569
           AA+S +   SP   L +   +Q+  Q+VP DI  E+R+L+ ++ E L+ FW  FP  T  
Sbjct: 426 AAISMILAQSPLEKLEQEGTQQADNQMVPIDILSEIRHLHTAVGEFLRHFWSRFPVNTKF 485

Query: 570 LESEATRMHDILQRFAMVKLKPFEDRAMRELLPLGSSLTQHLNQLLQSANRKYAIWQERQ 629
           LE +  ++ + L  F +     F+     +   L + L + + Q++ +A  KY  + +R+
Sbjct: 486 LEEKVVKLKNALSNFQVKLDCAFQQDIRNQ--NLSTLLVRPMQQMIDTAIDKYESYLQRR 543



==> gnl|CDD|37901 KOG2690, KOG2690, KOG2690, Uncharacterized conserved protein,
           contains BSD domain [Function unknown].
          Length = 331

 Score = 35.4 bits (81), Expect = 0.024
 Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 109 KIDKELEEKNRILTENPSLLQLYKDLVITQVLTSEEFWARH--AKEYMNKEQTVRQDI 164
            +D++ EE + +L  NP + +LY+DLV ++V + E FW R+    E + +E+  R+++
Sbjct: 175 SLDEKTEEISELLEGNPDIRKLYEDLVPSEV-SHETFWHRYFYKVEKLEQEEAKRKEL 231



==> gnl|CDD|39020 KOG3816, KOG3816, KOG3816, Cell differentiation regulator of the
           Headcase family [Signal transduction mechanisms].
          Length = 526

 Score = 30.1 bits (67), Expect = 0.90
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 341 GGGGAAANGQTGVANGKDKHNSNSLPADGANNNNNNNNNTVNGFSKKDKRS 391
            G  A    +    N   K  S+ LP   + +  N+      G +    RS
Sbjct: 196 PGEAAEEAKKCRPPNKPQKGPSHDLPRRHSMDRQNSQEKA-VGAAAYGARS 245