>AGAP011110-PA

gnl|CDD|71993 pfam08567, TFIIH_BTF_p62_N, TFIIH p62 subunit, N-t...    87   3e-018
gnl|CDD|67520 pfam03909, BSD, BSD domain. This domain contains a...    69   1e-012
gnl|CDD|69480 pfam05960, DUF885, Bacterial protein of unknown fu...    29   0.83 


==> gnl|CDD|71993 pfam08567, TFIIH_BTF_p62_N, TFIIH p62 subunit, N-terminal domain.
          The N-terminal domain of the TFIIH basal transcription
          factor complex p62 subunit (BTF2-p62) forms an
          interaction with the 3' endonuclease XPG, which is
          essential for activity. The 3' endonuclease XPG is a
          major component of the nucleotide excision repair
          machinery. The structure of the N-terminal domain
          reveals that it adopts a pleckstrin homology (PH)
          fold..
          Length = 74

 Score = 87.3 bits (216), Expect = 3e-018
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 10 LQMGEVRFKKGDGTLYVMNE-RIAWIAEHRDTVA-VSHRFQDIKMQKISPEGKPKVQLQV 67
          L  G V+FKK DGTL + ++ R+ W     D V  +S  F DIK  + SP    KV L++
Sbjct: 1  LHSGAVKFKKVDGTLSLTSDSRLIWRPTDGDKVPTISLNFSDIKNLQASPASSAKVMLRL 60

Query: 68 VLHDGNSSTFHFVN 81
          VL + + +TF F N
Sbjct: 61 VLKNDDPATFVFSN 74



==> gnl|CDD|67520 pfam03909, BSD, BSD domain. This domain contains a distinctive -FW-
           motif. It is found in a family of eukaryotic
           transcription factors as well as a set of proteins of
           unknown function..
          Length = 66

 Score = 68.5 bits (167), Expect = 1e-012
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 173 DIKPQTDGCNGLRYNLTADIIECIFKTYPAVKRKHTDNVPAKMTEAEFWTKFFQSHYFHR 232
           D+KP     N    +   + I+ + K  PA+++ + + VP K++E EFW ++F       
Sbjct: 1   DLKPSDLWDNEFDLDEKQEEIQALLKEDPALRKLYNELVPKKVSEEEFWARYFYLLRAIA 60

Query: 233 DRI 235
            + 
Sbjct: 61  LKE 63



 Score = 55.4 bits (133), Expect = 1e-008
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 97  ELLQQLLPNFRRKIDKELEEKNRILTENPSLLQLYKDLVITQVLTSEEFWARHAKEYMNK 156
           +L    L +    +D++ EE   +L E+P+L +LY +LV  +V + EEFWAR+       
Sbjct: 1   DLKPSDLWDNEFDLDEKQEEIQALLKEDPALRKLYNELVPKKV-SEEEFWARYFYLLRAI 59

Query: 157 EQTVRQ 162
                Q
Sbjct: 60  ALKEEQ 65



==> gnl|CDD|69480 pfam05960, DUF885, Bacterial protein of unknown function (DUF885).
           This family consists of several hypothetical bacterial
           proteins several of which are putative membrane
           proteins..
          Length = 546

 Score = 29.1 bits (65), Expect = 0.83
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 248 GKIDDQQLRQSVQENLGDPLLDIRAFEDNTLEEG 281
           G++   +LR+  ++ LGD   DIRAF D  L  G
Sbjct: 499 GELKILRLREKAEKALGDKF-DIRAFHDAVLLNG 531