>AGAP004711-PA

Q9V3C0|ABS_DROME ATP-dependent RNA helicase abstrakt (EC 3.6.1.-...   952   0.0  
Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 (EC...   840   0.0  
Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 (EC...   838   0.0  
Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A (EC 3...   670   0.0  
Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 (EC 3.6...   669   0.0  
Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B (EC 3...   647   0.0  
Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 4...   620   e-177
Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 (EC 3.6...   305   4e-082
Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 (EC 3.6...   303   2e-081
Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 (EC 3.6...   301   4e-081


==> Q9V3C0|ABS_DROME ATP-dependent RNA helicase abstrakt (EC 3.6.1.-)
           (DEAD box protein abstrakt) - Drosophila melanogaster
           (Fruit fly)
          Length = 619

 Score =  952 bits (2461), Expect = 0.0
 Identities = 482/617 (78%), Positives = 543/617 (88%), Gaps = 10/617 (1%)

Query: 6   VKRYRRDSQKSE--DEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTVGKSSSENEH 63
           VKRYRR S+ SE  D ++  +VPYV VKERKKQ ++KLGRIVQL +E +   KSSSENE+
Sbjct: 4   VKRYRRSSKSSEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSETAQP-KSSSENEN 62

Query: 64  EEESTE----ESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKKAL 119
           E++S      E+WGRK+NISLLDQHTELKKIAEAKK+SAVEKQL+EEEKI+ES+A++KAL
Sbjct: 63  EDDSQGAHDVETWGRKYNISLLDQHTELKKIAEAKKLSAVEKQLREEEKIMESIAQQKAL 122

Query: 120 MGVAELAKGIQYEDPIKTSWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREM 179
           MGVAELAKGIQYE PIKT+W PPRYI    E   E +R +LRIL EGE   PP+R+FREM
Sbjct: 123 MGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREM 182

Query: 180 KLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQ 239
           K PK +L  LA + IK P+PIQVQG+P VLAGRDLIGIAFTGSGKTLVFVLP+IMF LEQ
Sbjct: 183 KFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQ 242

Query: 240 ELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDA 299
           E  LPF + EGPYGLIICPSRELAKQTH+IIQ+Y +HLQ  GMPEIR+ LA+GG+PV++A
Sbjct: 243 EYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEA 302

Query: 300 IAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFK 359
           + +I +G HI+VATPGRLMDMLDKK++TLD+CRYLCMDEADRMIDMGFEEDVRTIFS+FK
Sbjct: 303 LDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK 362

Query: 360 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLE 419
           GQRQTLLFSATMPKKIQNFA+SALVKPVTINVGRAGAASMNVTQ VEYVKQEAKVVYLL+
Sbjct: 363 GQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLD 422

Query: 420 CLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVL 479
           CLQKT PPVLIFAEKKQDVD IHEYLLLKGVEAVAIHGGKDQEER R+V+++R  +KDVL
Sbjct: 423 CLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVL 482

Query: 480 VATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLL 539
           VATDVASKGLDFP+VQHVINYDMPDDIENYVHRIGRTGRS +KGLATT INK TEQ VLL
Sbjct: 483 VATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLL 542

Query: 540 DLKHLLIEAQQKVPPFLGELCSETE-KYADLGD--GCSYCGGLGHRITECPKLEAVQSKQ 596
           DLKHLLIE +Q+VP FL EL  ETE ++ DLGD  GC+YCGGLGHRITECPKLEAVQ+KQ
Sbjct: 543 DLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDSHGCTYCGGLGHRITECPKLEAVQNKQ 602

Query: 597 ASNIGRRDYLSNTAADY 613
           ASNIGRRDYLSNTAADY
Sbjct: 603 ASNIGRRDYLSNTAADY 619



==> Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 (EC
           3.6.1.-) (DEAD box protein 41) (DEAD box protein
           abstrakt homolog) - Homo sapiens (Human)
          Length = 622

 Score =  840 bits (2170), Expect = 0.0
 Identities = 420/621 (67%), Positives = 505/621 (81%), Gaps = 11/621 (1%)

Query: 2   SSPRVKRYRRDS-------QKSEDEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTV 54
           S P  KR R D         ++EDE+D  +VPYV +++R++  L KL +  +  A     
Sbjct: 4   SEPERKRARTDEVPAGGSRSEAEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQ 63

Query: 55  GKSSSENEHEEESTEESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVA 114
             S SE   +E+      G + N+SLLDQH  LK+ AEA+K SA EKQLKEEEKILESVA
Sbjct: 64  QDSGSEPRGDEDDIP--LGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVA 121

Query: 115 EKKALMGVAELAKGIQYEDPIKTSWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLR 174
           E +ALM V E+AKGI Y+DPIKTSWTPPRY+LS  E RHE++R+K  IL EG+ +PPP++
Sbjct: 122 EGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIK 181

Query: 175 TFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIM 234
           +F+EMK P A+L  L K+ I  P+PIQ+QGIP +L+GRD+IGIAFTGSGKTLVF LP+IM
Sbjct: 182 SFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 235 FCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGV 294
           FCLEQE RLPF KREGPYGLIICPSRELA+QTH I++YYCR LQE   P +R  L IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 295 PVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTI 354
            V + +  I+ G H+MVATPGRLMD+L KK+V+LD+CRYL +DEADRMIDMGFE D+RTI
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 355 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKV 414
           FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAAS++V Q+VEYVK+EAK+
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM 421

Query: 415 VYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQ 474
           VYLLECLQKTPPPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEER +++E+FR  
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481

Query: 475 EKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATE 534
           +KDVLVATDVASKGLDFP +QHVINYDMP++IENYVHRIGRTGRSG+ G+ATTFINKA +
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541

Query: 535 QFVLLDLKHLLIEAQQKVPPFLGELCSETEKYADLGD--GCSYCGGLGHRITECPKLEAV 592
           + VL+DLK LL+EA+QKVPP L  L    E   D+G   GC++CGGLGHRIT+CPKLEA+
Sbjct: 542 ESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAM 601

Query: 593 QSKQASNIGRRDYLSNTAADY 613
           Q+KQ SNIGR+DYL++++ D+
Sbjct: 602 QTKQVSNIGRKDYLAHSSMDF 622



==> Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 (EC
           3.6.1.-) (DEAD box protein 41) - Mus musculus (Mouse)
          Length = 622

 Score =  838 bits (2166), Expect = 0.0
 Identities = 420/621 (67%), Positives = 504/621 (81%), Gaps = 11/621 (1%)

Query: 2   SSPRVKRYRRDS-------QKSEDEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTV 54
           S P  KR R D         + EDE+D  +VPYV +++R++  L KL +  +  A     
Sbjct: 4   SEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATEEEQ 63

Query: 55  GKSSSENEHEEESTEESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVA 114
             S SE   +E+      G + N+SLLDQH  LK+ AEA+K SA EKQLKEEEKILESVA
Sbjct: 64  QDSGSEPRGDEDDIP--LGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVA 121

Query: 115 EKKALMGVAELAKGIQYEDPIKTSWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLR 174
           E +ALM V E+AKGI Y+DPIKTSWTPPRY+LS  E RHE++R+K  IL EG+ +PPP++
Sbjct: 122 EGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIK 181

Query: 175 TFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIM 234
           +F+EMK P A+L  L K+ I  P+PIQ+QGIP +L+GRD+IGIAFTGSGKTLVF LP+IM
Sbjct: 182 SFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241

Query: 235 FCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGV 294
           FCLEQE RLPF KREGPYGLIICPSRELA+QTH I++YYCR LQE   P +R  L IGG+
Sbjct: 242 FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301

Query: 295 PVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTI 354
            V + +  I+ G H+MVATPGRLMD+L KK+V+LD+CRYL +DEADRMIDMGFE D+RTI
Sbjct: 302 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361

Query: 355 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKV 414
           FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAAS++V Q+VEYVK+EAK+
Sbjct: 362 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM 421

Query: 415 VYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQ 474
           VYLLECLQKTPPPVLIFAEKK DVDAIHEYLLLKGVEAVAIHGGKDQEER +++E+FR  
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481

Query: 475 EKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATE 534
           +KDVLVATDVASKGLDFP +QHVINYDMP++IENYVHRIGRTGRSG+ G+ATTFINKA +
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541

Query: 535 QFVLLDLKHLLIEAQQKVPPFLGELCSETEKYADLGD--GCSYCGGLGHRITECPKLEAV 592
           + VL+DLK LL+EA+QKVPP L  L    E   D+G   GC++CGGLGHRIT+CPKLEA+
Sbjct: 542 ESVLMDLKALLLEAKQKVPPGLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAM 601

Query: 593 QSKQASNIGRRDYLSNTAADY 613
           Q+KQ SNIGR+DYL++++ D+
Sbjct: 602 QTKQVSNIGRKDYLAHSSMDF 622



==> Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A (EC
           3.6.1.-) - Oryza sativa subsp. japonica (Rice)
          Length = 627

 Score =  670 bits (1728), Expect = 0.0
 Identities = 338/607 (55%), Positives = 451/607 (74%), Gaps = 22/607 (3%)

Query: 16  SEDEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEA---STVGKSSSE---------NEH 63
           + D+EDN +  Y+ V +R+  +  +L R+ +L+  A   S+  +++S+         N+ 
Sbjct: 16  NSDDEDN-YEEYIPVAKRRAMEADRLRRL-RLSKPAPPSSSAAEAASDLPPPPPPPPNQP 73

Query: 64  EEESTEESWGRKFNISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKKALMGVA 123
                          SLL + T+LK+ A   +++  E+ + +E++++E ++++K LM V 
Sbjct: 74  SAGGGGGGLEASAKPSLLVKATQLKRAAP--EVTHTEQLIMQEKEMIEHLSDRKTLMSVR 131

Query: 124 ELAKGIQYEDPIKTSWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREMKLPK 183
           ELAKGI Y DP+KT W PP  +   P ++ +++R K  IL +G++VPPP R FR+++LP+
Sbjct: 132 ELAKGITYSDPLKTGWKPPLRLRRMPRAKADELRRKWHILVDGDDVPPPARDFRDLRLPE 191

Query: 184 AVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRL 243
            +L  L ++ I +P+PIQVQG+P VL+GRD+IGIAFTGSGKTLVFVLP+IM  L++E+ +
Sbjct: 192 PMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMMM 251

Query: 244 PFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAII 303
           P +  EGP+G+IICPSRELAKQT+D+I+ +   L+EAG PEIR +L IGGV +   + ++
Sbjct: 252 PIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVV 311

Query: 304 QQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQ 363
           ++G HI+VATPGRL D+L KK + LD CRYL +DEADR++D+GFE+D+R +F +FK QRQ
Sbjct: 312 KKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQ 371

Query: 364 TLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLECLQK 423
           TLLFSATMPKKIQNFAKSALVKPV +NVGRAGAA+++V Q+VEYVK++A+++YLLECLQK
Sbjct: 372 TLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLECLQK 431

Query: 424 TPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATD 483
           TPPPVL+F E K DVD IHEYLLLKGVEAVAIHGGKDQEER  ++E F+N +KDVLVATD
Sbjct: 432 TPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATD 491

Query: 484 VASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKH 543
           VASKGLDFPD+QHVINYDMP +IENYVHRIGRTGR G  G+ATTFINK   +  LLDLKH
Sbjct: 492 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKH 551

Query: 544 LLIEAQQKVPPFLGELCSETEKYADLGD-----GCSYCGGLGHRITECPKLEAVQSKQAS 598
           LL EA+Q++PP L EL    E    +       GC+YCGGLGHR+T+CPKLE  Q   A 
Sbjct: 552 LLKEAKQRIPPVLAELNDPLEDEETMAKESGVKGCAYCGGLGHRVTDCPKLEH-QKSMAI 610

Query: 599 NIGRRDY 605
              RRDY
Sbjct: 611 AGSRRDY 617



==> Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 (EC
           3.6.1.-) - Arabidopsis thaliana (Mouse-ear cress)
          Length = 591

 Score =  669 bits (1727), Expect = 0.0
 Identities = 335/595 (56%), Positives = 446/595 (74%), Gaps = 21/595 (3%)

Query: 19  EEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTVGKSSSENEHEEESTEESWGRKFNI 78
           EE +S++ YVSV ER+    +   +I+Q   +AS +     E E ++E   E+       
Sbjct: 6   EEADSYIEYVSVAERRA---IAAQKILQRKGKASEL-----EEEADKEKLAEA-----KP 52

Query: 79  SLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKKALMGVAELAKGIQYEDPIKTS 138
           SLL Q T+LK+  +  ++SA E+ + +E++++E +++KK LM V ELAKGI Y +P+ T 
Sbjct: 53  SLLVQATQLKR--DVPEVSATEQIILQEKEMMEHLSDKKTLMSVRELAKGITYTEPLLTG 110

Query: 139 WTPPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREMKLPKAVLAALAKRNIKKPS 198
           W PP +I      + + IR++  I+  G+++PPP++ F++MK P+ VL  L ++ I +P+
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170

Query: 199 PIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRLPFIKREGPYGLIICP 258
           PIQVQG+P +LAGRD+IGIAFTGSGKTLVFVLP+IM  L++E+ +P    EGP GLI+CP
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230

Query: 259 SRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLM 318
           SRELA+QT+++++ +   L EAG P +R++L IGG+ +   + ++++G HI+VATPGRL 
Sbjct: 231 SRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLK 290

Query: 319 DMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQNF 378
           DML KK ++LD CRYL +DEADR++D+GFE+D+R +F +FK QRQTLLFSATMP KIQ F
Sbjct: 291 DMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIF 350

Query: 379 AKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLECLQKTPPPVLIFAEKKQDV 438
           A+SALVKPVT+NVGRAGAA+++V Q+VEYVKQEAK+VYLLECLQKT PPVLIF E K DV
Sbjct: 351 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADV 410

Query: 439 DAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVI 498
           D IHEYLLLKGVEAVAIHGGKDQE+R  ++ SF+  +KDVLVATDVASKGLDFPD+QHVI
Sbjct: 411 DDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI 470

Query: 499 NYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFLGE 558
           NYDMP +IENYVHRIGRTGR G  G+ATTFINK   +  LLDLKHLL EA+Q++PP L E
Sbjct: 471 NYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 530

Query: 559 LCSETEKYADLGD-----GCSYCGGLGHRITECPKLEAVQSKQASNIGRRDYLSN 608
           L    E+   + +     GC+YCGGLGHRI +CPKLE  +S   SN  R+DY  +
Sbjct: 531 LNDPMEEAETIANASGVKGCAYCGGLGHRIRDCPKLEHQKSVAISN-SRKDYFGS 584



==> Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B (EC
           3.6.1.-) - Oryza sativa subsp. japonica (Rice)
          Length = 619

 Score =  647 bits (1669), Expect = 0.0
 Identities = 324/594 (54%), Positives = 434/594 (73%), Gaps = 10/594 (1%)

Query: 18  DEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTVGKSSSENEHEEESTEESWGRKFN 77
           D ++  +  YV V +R+  +  +L R  +     + V  ++        S+         
Sbjct: 20  DSDEEDYEEYVPVAKRRAMEAERLRRATK-PPTTNAVAVAAPPPPPRSTSSPAVGEVAVK 78

Query: 78  ISLLDQHTELKKIAEAKKISAVEKQLKEEEKILESVAEKKALMGVAELAKGIQYEDPIKT 137
            SLL + T+LK+  EA +++  E+ L++E +++E ++++KALM V E+AKGI Y +PI T
Sbjct: 79  TSLLVKATKLKR--EAPEVTPAERLLQQEREMIEHLSDRKALMPVGEIAKGISYSEPITT 136

Query: 138 SWTPPRYILSKPESRHEKIREKLRILTEGENVPPPLRTFREMKLPKAVLAALAKRNIKKP 197
            W PP  +   P SR + +R    IL +G++VPPP R+F +++LP+ +L AL  + I+KP
Sbjct: 137 GWRPPLRLRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKP 196

Query: 198 SPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQELRLPFIKREGPYGLIIC 257
           +PIQVQG+P  L+GRD+IGIAFTGSGKTLVFVLP+IM  L++E+ +P +  EGP+GLI+C
Sbjct: 197 TPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVC 256

Query: 258 PSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRL 317
           PSRELA+QTH++I+ +   L EAG PEIR +L IGGV +   + ++++G HI+VATPGRL
Sbjct: 257 PSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRL 316

Query: 318 MDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQN 377
            D+L KK + LD CRYL +DEADR++D+GFE+D+R +F +FK QRQTLLFSATMP+KIQN
Sbjct: 317 KDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPEKIQN 376

Query: 378 FAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLECLQKTPPPVLIFAEKKQD 437
           FAKSALVKP+ +NVGRAGAA+++V Q+VEYVK+EA+++YLLECLQKTPPPVL+F E K D
Sbjct: 377 FAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLECLQKTPPPVLVFCEHKAD 436

Query: 438 VDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHV 497
           VD I E+LLLKGVEAVAIHGGKD EER  + +SF+  EKDVLVATDVASKGLD PD+QHV
Sbjct: 437 VDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVLVATDVASKGLDIPDIQHV 496

Query: 498 INYDMPDDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFLG 557
           INYDMP +IENYVHRIGRTGR G  G+ATTFINK   +  LLDLK LLIE++Q++PP L 
Sbjct: 497 INYDMPAEIENYVHRIGRTGRRGKTGVATTFINKNQTETTLLDLKQLLIESKQRLPPILA 556

Query: 558 EL--CSETEKYADLGD----GCSYCGGLGHRITECPKLEAVQSKQASNIGRRDY 605
           +L    E +K A        GC++CGGLGHRI  CPK + +Q+       R DY
Sbjct: 557 DLDDPQEDDKVAIAQQSGVKGCAFCGGLGHRIEACPK-QQLQNSVTLARARSDY 609



==> Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43
           (EC 3.6.1.-) - Arabidopsis thaliana (Mouse-ear cress)
          Length = 542

 Score =  620 bits (1598), Expect = e-177
 Identities = 304/522 (58%), Positives = 397/522 (76%), Gaps = 8/522 (1%)

Query: 94  KKISAVEKQLKEE--EKILESVAEKKALMGVAELAKGIQYEDPIKTSWTPPRYILSKPES 151
           ++++ +++++ EE  + ++E +++KK LM V ELA+GI Y +P+ T W PP ++      
Sbjct: 15  ERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTK 74

Query: 152 RHEKIREKLRILTEGENVPPPLRTFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAG 211
           + + IR++  I   GE++PPP++ F +MK P  +L  L  + I  P+PIQVQG+P VL+G
Sbjct: 75  QMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSG 134

Query: 212 RDLIGIAFTGSGKTLVFVLPIIMFCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQ 271
           RD+IGIAFTGSGKTLVFVLP+I+  L++E+ +P    EGP  L+ICPSRELAKQT+D+++
Sbjct: 135 RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVE 194

Query: 272 YYCRHLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVC 331
            +   L E G P +R++L IGGV +   + ++++G HI+VATPGRL D+L KK ++LD C
Sbjct: 195 QFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDAC 254

Query: 332 RYLCMDEADRMIDMGFEEDVRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINV 391
           R L +DEADR++D+GFE+D+R +F +FK QRQTLLFSATMP KIQ FA SALVKPVT+NV
Sbjct: 255 RLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNV 314

Query: 392 GRAGAASMNVTQDVEYVKQEAKVVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVE 451
           GRAGAA+++V Q+VEYVKQEAK+VYLLECLQKT PPVLIF E K DVD IHEYLLLKGVE
Sbjct: 315 GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVE 374

Query: 452 AVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVH 511
           AVAIHGGKDQE+R  ++  F+  +KDVLVATDVASKGLDFPD+QHVINYDMP +IENYVH
Sbjct: 375 AVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVH 434

Query: 512 RIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFLGEL---CSETEKYAD 568
           RIGRTGR G  G+ATTFINK   +  LLDLKHLL EA+Q++PP L EL     ETE  A+
Sbjct: 435 RIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIAN 494

Query: 569 LG--DGCSYCGGLGHRITECPKLEAVQSKQASNIGRRDYLSN 608
                GC+YCGGLGHRI +CPK E  Q   A +  R+D+  +
Sbjct: 495 ASGVKGCAYCGGLGHRILQCPKFEH-QKSVAISSSRKDHFGS 535



==> Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 (EC
           3.6.1.-) - Oryza sativa subsp. japonica (Rice)
          Length = 736

 Score =  305 bits (781), Expect = 4e-082
 Identities = 197/577 (34%), Positives = 305/577 (52%), Gaps = 45/577 (7%)

Query: 8   RYRRDSQKSEDEEDNSFVPYVSVKERKKQQLLKLGRIVQLTAEASTVGKSSSENEHEEES 67
           R  + +++  ++E ++        ++ K++++K     + + +      +S +     +S
Sbjct: 149 RLEKMAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQS 208

Query: 68  TEES---WGRKFNISLLDQHTELKKIAEAKKISAVEKQLKE--EEKILESVAEKKALMGV 122
             E+   +GR F ++ +D+  + K  A  +K +  E++ K   +++  +   +KK     
Sbjct: 209 PHEARLLYGRGF-LAGIDRREQKKVAAAHEKETRAEQRRKAGLDDRPEDDAVDKKEADAA 267

Query: 123 AELAKGIQYEDPIKTSWTPPRYILSKPESRHEKI-REKLRILTEGENVPPPLRTFREMKL 181
           A   K   ++  +   WT     L +   R  +I RE   I  +G  VP P+R + E KL
Sbjct: 268 A---KYDAFDMRVDRHWTQKS--LDEMTERDWRIFREDFNISYKGSKVPRPMRKWSESKL 322

Query: 182 PKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQEL 241
              +L A+ K   K+PSPIQ+  IP  L  RD+IGIA TGSGKT  FVLP++ +      
Sbjct: 323 GTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYIT---- 378

Query: 242 RLPFIKRE----GPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGVPVN 297
           RLP I  E    GPY +++ P+RELA+Q  +    +  +L       I+ V  +GG  + 
Sbjct: 379 RLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLG------IKVVSIVGGQSIE 432

Query: 298 DAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSY 357
           +    I+QG  +++ATPGRL+D L+++   L+ C Y+ +DEADRMIDMGFE  V  +   
Sbjct: 433 EQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDA 492

Query: 358 FKGQ-----------------RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMN 400
                                R T +FSATMP  ++  A+  L  PV + +G AG A+  
Sbjct: 493 MPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDL 552

Query: 401 VTQDVEYVKQEAKVVYLLECLQKT-PPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGK 459
           +TQ+V   K+  K+  L + L      P ++F   K+  DA  + L   G     +HGGK
Sbjct: 553 ITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGK 612

Query: 460 DQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRS 519
            QE+R  S++ FRN+   VLVATDVA +G+D PDV HVINY+MP  I+ Y HRIGRTGR+
Sbjct: 613 SQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRA 672

Query: 520 GSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFL 556
           G KGLAT+F+       +  DLK +LI++   VPP L
Sbjct: 673 GKKGLATSFLTLENTD-IFFDLKQMLIQSNSPVPPEL 708



==> Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 (EC
           3.6.1.-) - Arabidopsis thaliana (Mouse-ear cress)
          Length = 633

 Score =  303 bits (775), Expect = 2e-081
 Identities = 170/420 (40%), Positives = 254/420 (60%), Gaps = 21/420 (5%)

Query: 158 EKLRILTEGENVPPPLRTFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGI 217
           E + I T G+NVPPP+ TF E+ L +A+   + +    KP+P+Q   IP +L GRDL+  
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMAC 202

Query: 218 AFTGSGKTLVFVLPIIMFCL-EQELRLPFIKREG-PYGLIICPSRELAKQTHDIIQYYCR 275
           A TGSGKT  F  PII   + +Q ++ P   R   P  +I+ P+RELA Q HD  + +  
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS- 261

Query: 276 HLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLC 335
              + G   ++ V+A GG P+N  +  +++G  I+VATPGRL D+L++  V++ + R+L 
Sbjct: 262 --YQTG---VKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLA 316

Query: 336 MDEADRMIDMGFEEDVRTIFSYF----KGQRQTLLFSATMPKKIQNFAKSALVKPVTINV 391
           +DEADRM+DMGFE  +R I        +G RQTLLFSAT P++IQ  A   L   + + V
Sbjct: 317 LDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAV 376

Query: 392 GRAGAASMNVTQDVEYVKQEAKVVYLLECL--------QKTPPPVLIFAEKKQDVDAIHE 443
           GR G+++  + Q VE+V    K  +L++ L        Q      L+F E K+  D++  
Sbjct: 377 GRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLEN 436

Query: 444 YLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMP 503
           +L + G  A +IHG + Q+ER  ++++F++    +LVATDVA++GLD P V HV+N+D+P
Sbjct: 437 WLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLP 496

Query: 504 DDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFLGELCSET 563
           +DI++YVHRIGRTGR+G  GLAT F N      +   L  L+ EA Q+VP +L    S +
Sbjct: 497 NDIDDYVHRIGRTGRAGKSGLATAFFNDGNTS-LARPLAELMQEANQEVPEWLTRYASRS 555



==> Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 (EC
           3.6.1.-) - Arabidopsis thaliana (Mouse-ear cress)
          Length = 646

 Score =  301 bits (772), Expect = 4e-081
 Identities = 179/458 (39%), Positives = 259/458 (56%), Gaps = 42/458 (9%)

Query: 158 EKLRILTEGENVPPPLRTFREMKLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGI 217
           E + I T G+NVPPP+ TF E+ L +A+   + +    KP+P+Q   IP + AGRDL+  
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMAC 189

Query: 218 AFTGSGKTLVFVLPIIMFCL-EQELRLPF-IKREGPYGLIICPSRELAKQTHDIIQYYCR 275
           A TGSGKT  F  PII   + +Q +  P  ++   P  +I+ P+RELA Q HD  + +  
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS- 248

Query: 276 HLQEAGMPEIRTVLAIGGVPVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLC 335
              + G   ++ V+A GG PVN  I  +++G  I+VATPGRL D+L++  V+L + R+L 
Sbjct: 249 --YQTG---VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLA 303

Query: 336 MDEADRMIDMGFEEDVRTIFSYFK----GQRQTLLFSATMPKKIQNFAKSALVKPVTINV 391
           +DEADRM+DMGFE  +R I         G RQT+LFSAT P++IQ  A   L   + + V
Sbjct: 304 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAV 363

Query: 392 GRAGAASMNVTQDVEYVKQEAKVVYLLECL--------QKTPPPVLIFAEKKQDVDAIHE 443
           GR G+++  + Q VE+V    K  +L++ L        Q      L+F E K+  D++  
Sbjct: 364 GRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLEN 423

Query: 444 YLLLKGVEAVAIHGGKDQEERYRSVESFRNQEKDVLVATDVASKGLDFPDVQHVINYDMP 503
           +L + G  A  IHG + Q+ER  ++ SF+     +LVATDVA++GLD P V HV+N+D+P
Sbjct: 424 WLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 483

Query: 504 DDIENYVHRIGRTGRSGSKGLATTFINKATEQFVLLDLKHLLIEAQQKVPPFLGELCSET 563
           +DI++YVHRIGRTGR+G+ GLAT F N      +   L  L+ EA Q+VP +L    S  
Sbjct: 484 NDIDDYVHRIGRTGRAGNSGLATAFFND-NNTTMAKPLAELMQEANQEVPDWLTRYASRA 542

Query: 564 ---------------------EKYADLGDGCSYCGGLG 580
                                E ++  G G  Y GG G
Sbjct: 543 SFGGGKNRRSGGRFGGRDFRRESFSRGGGGADYYGGGG 580