Herpes Simplex Virus Oligonucleotide Probes used in the DNA-microarray
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Probe Name kinetics ID	Transcript Name	Sequence of Probe (17syn+) Oligo (mRNA sense)
E-1	U1/2	CAGGCCGGACCCTCGGGTCCATTGCGTCCTCAAGTTTTCGCACCCGTCGCCCCTCTCCAAGGTTCCGTTCGGAAC
?	U1X	GCGGCCTGCTTGCGACTGTCCAGCGCCTGGCGTATCTCTTTATAAAGGGCCAAGCGCGTTTCTGTTTCCTGGGTG
L-1	U3	AGTTCGTCTCGTCCGAGCCAATGCGCCTCCACCGAGATAACGTCATGCTGGCCTCGGGGGCCGAGTAACCGCCCC
E-2	U4-5'	ATGTCCAATCCACAGACGACCATCGCGTATAGCCTATGCCACGCCAGGGCCTCGCTGACCAGCGCACTGCCCGAC
E-3	U4/5	CGCCTCCACCCCCGACAACCGCCTGCCCCGGGACGGCCGAGTTTCTCCAGCCCACCGCGGACCTGCTGGTAGAGG
L/?	U6/7	GGATCATGGGGAGCTGCTGGGCGTCGGAGGAGGTGCGCGCGCCTCTGGTCTATTGGTGGCTTTCGGAGACCCCAA
E-4	U8/9	CGTCCCCGTCGATCTATACCCGCGGCCCCTTGTGCTCCCCCCCGTGGACTGCGCTCATCACCTGCGCGAAATCCT
E-5	U8-5'	AGACCGGGCCGGTGGCCCTGTTCGCCCCGCTGCGTATCGGCTCGGACCCACGCACGGGACTGGTGGTGAAAGTTG
L-2	U10	GACGATCCCATCTATGACACCGTTGGGGGGTACGACCCCGAGCCCGCCGAGGACCCCGTGTACAGCACCGTCCGC
L/E/L	U11/14	TCTCCTGGGGGCACCCACGCCCGCGACCCGGACGCCGATCCCGACTCCCCGGACCTTGACTCTATGTGGTCGGCG
L-4	U15	TTATGGCCATCTACCTCGCGGCCCAGGCCGGACCTCCGCACACATTCGCTCCTATCACACGCGTCTCGTGAGCGCC
L-3	U16/17	GTCCGCTTCTCTTTGGCCATCCCGTGGATACGGTCACCCTGCTGCAGGCCCCCCGCCGTCCTTGCATCACGGACC
L-5	U18/20	CTGCTGGCGGACGTCCAACAACTCGGTCCCGTAAACGCCGAGCTGCGATCGCTGGTCCTTAACATGGTTTACTCG
L-6	U19/20	CCGACATCGCCGCCAAACATCGCTGCCTGGAGCGCCTGATCGTGGAGACGGGTTCGGCGGTGTCCACGGCCACCG
L-7	U19-5'	GCGTACAGTTCGAGGTCCACCAGCCGCTGATTGCCCGCGACGGCCCGCACCCCATCGAGCAACCCACACACAATT
L-8	U21	GGGCCGCCGGGTACCTGGATGTGCTTCTTACCGTTCGTCTCGCTCGCTCCCAACACGGACAGTCTGTGTAAAAGA
L-9	U22	GTTTCTGGCCGCCTCTGCGCTGGGCGTGGTTATGATTACCGCCGCCCTGGCTGGCATCCTAAAGGTTCTCCGGAC
E-6	U23	CGACCAATCGCCCGCCGGCTGCCGGGACGCCCTGCTGCAACTTACCTCCGGGATGGTCCAGACCCACGTCACCAC
L-10	U24	GAAGACTCATTTGGATCCGGCGGGAGCCACCCGACAACAGCCCCCGGGTTTTCCCACGCCAGACGCCGGTCCGCT
L-11	U(24)/25/26	TCCCCCCCGCCGCCACCGGATCCCAACCGGAGGCATCCAACGCGGAGGCCGGGGCCCTTGTCAACGCCAGCAGCG
E-7	U27/8	TGCGCAAGCGCCGCAACACCAACTACACCCAAGTTCCCAACAAAGACGGTGACGCCGACGAGGACGACCTGTGAT
E-8	U27-5'	CCCTGCCACTCCGGCGCCGCCCGCCCCTGGCGCCCCCCCAACGGGGGACCCGAAACCGAAGAAGAACAGAAAACC
E-9	U29	CCCCCGACAAAAAGGGAGACCTGACGTTGGATATGCTGTGAGGGGTTGGGGGGTGGGGGAACCTAGGGCGGGGCG
E-10	U30	CTGGTGTCCGAGCTGGCCGAGGATCCCGCATACGCCATTGCCCACGGCGTCGCCCTGAACACGGACTATTACTTC
L-12	U31/32	AGCGCCGGCACCCACCGCCCCGAACCCTGCGGTCCGGAGCCGCGCGGCCACGTCGTCCGGGGGGTGCCACACTTC
L-13	U33/34/35	CCGCGTTTGGCCTGCGGCGCACCTATTCACCGTTTGTCGTTCGAGAACCTTCGACGCCCGGGACCCCGTGAGGCC
E/L	U36	GCCGGGCGCTGCTTCATCACAGCGACGCCGTGCTGACCAGCCTACATCACGTGCGCATGTTACTGGGCTAGACGC
L-14	U37	CGACGCCGGAAACAGTCTCCCCGCGCCTATGCCCATGGACGCACAGAAGCCGGAGGCCTATGGGCACGGCCCACG
L-15	U38	AAACGCCCCGCCCACACAACGCTCCGCCCCCAACCCCTTCCCCGCTGTCACTCGTTGTTCGTTGACCCGGGCGTC
E-11	U39-5'	TGACGGAAAGGCTTCGCGAGCACGAAGCCCAGCTGGTGATCCTGGCCCAGGCTCTGGACCATTACGACTGTCTGA
E-12	U39/40	CCCCGACGCCAGCTTTCCGCTGAGCCTCATGTCCACCGACAAACACACCAATTTTTTCGAGTGTCGCAGCACCTC
L-16	U41	AAGGACGTCCTGGCCAAATTCTGGGACGAGTAGCCCAAACGTCAGACGAGCGCGCTTGTCCCCGAACAAACGACC
L-17	U42	GGCCCGTCCCGCCGCTCCAGACGCCCGGAGCGGAAGCCGTTACGCGTGTTACTTTCGCGACCTCCCGACCGGAGA
L-18	U43	GCGGCGACGCTTCGGGGCCTCTTCTTCTCCGTGTACGCGCTGGGGTTTGGGGTGGGGGTGCTGCTGTGCCCTCCG
?	U43.5-5'	CCGACGGCGAACGCCCCAGACGCGGCATTCGCGTACGGCCCGCGCGACATAACGACCGATCCCGCAAAACCCAGC
L-19	U44-5'	CACATCGGGGTCCCCCGGGTCAGCCGCCAGCCCGGAGGTCACCCCCACATCGACCCCAAACCCCAACAATGTCAC
L-20	U44/45	GCGCTGGGGCTGCCGTGAGGCGCGTGTACTGCGGTCTGTCTCGTCTCCTCTTCTCCCCTTCCCTCCCCCTCCGCA
E-13	U46/47	CGCCCCCGCCGTTGAGCCCCTCGCCCGTCCTCGCCCGCCATCGAGCCAACGCCCTGACCAACGACGGCCCGACCA
L-21	U48	AGTACGGTGGGTAGGGGGCGCGACCGGACCCGCATCCCCCGTCTGGGTTTTCCCCTCCCGTCACCGGTTCGTATC
E/L	U49	ACCGAGCGACCTCGAGCCCCAGCCCGCTCCGCTTCTCGCCCCAGACGGCCCGTCGAGTGAAAACTTCCGTACCCA
E-14	U50	TCACGGGACCAAAGCGCTTCGAAACTACCCCAGGGGTGTTCCGGACTCAACCGCCGAACCCAGGAACCCGCCGCT
L-22	U51	TCCGTTCCCAGACCTACAGCCTCCCCAACCGCACCTCGCCCTGGCCCATCTCGAGCAGCTCCGTGTGTTTTGGGT
E-15	U52-5'	ACGCTATACGTCCACCACGAGGTGCGCGTGCTTGCCGCGTACCGCAGGGCGTATTATGGAAGCGCGCAGAGTCCC
E/L h	U52/53	CCCCCGAGGCCACGTGTAGCCTGGATCCCAACGACCCCGCCCATGGGTCCCAATTGGCCGTCCCGTTACCAAGAC
IE-1	U54 f	TCTGCGAGTTGACGGCCAGTCACATCGTCGCCCCCCCGTACGTGCACGGCAAATATTTTTATTGCAACTCCCTGT
E-16	U55	ACCACTGCCACTGTCGGTATCCGTTCTCAAAAACATGCTGGATGGGGGCCTCCGCGGCCCTACAGCACCTGCGCT
L-23	U56	CGGCTCGTCTGATCATGCCCCATACCGGCGACAGGGCTGTTGTGGCGTGGTGTGGCGCCATGCTGTATTTGGGGT
L-24	RLXY	GCGCCGGTCCATTAAGGGCGCGCGTGCCCGCGAGATATCAATCCGTTAAGTGCTCTGCAGACAGGGGCACCGCGCC
L-25	RLX	GGCCACCGCCGCCCACCCACCCACCTCGGGATACCCAGCCCCGGTCCCCCGTTCCCCGGGGGCCGTTATCTCCAG
LT-1	RLAT-5'	AGGGGCCCCGGCCCGGGGCCCCACAACGGCCCGGCGCATGCGCTGTGGTTTTTTTTTCCTCGGTGTTCTGCCGGG
LT-2	RHA6	GTAGTTAACCCCCCCCGCCCTTTGTGGCGGCCAGAGGCCAGGTCAGTCCGGGCGGGCAGGCGCTCGCGGAAACTT
LAT	RLAT-I	CTATGCTTGGGTCTTACTGCCTGGGGGGGGGGAGTGCGGGGGAGGGGGGGTGTGGAAGGAAATGCACGGCGCGTG
IE-2	RICP0	TCGACCAGGGCACCCTAGTGGGCGCCCTGGACTTCCGCAGCCTGCGGTCTCGGCACCCGTGGTCCGGGGAGCAGG
?	ROP	GGTGGTCTCTGGCCGCGCCCACTACACCAGCCAATCCGTGTCGGGGAGGGGAAAAGTGAAAGACACGGGCACCAC
?	ROP	GAACAAGAAGGCGGGGGCCCACCGGCGGGGGGCGGCGGCGGGGCGGCCGCGGGCGCGCTCCTGACCGCGGGTTCC
L-26	RICP34.5	TCGGGGGCGGGACTGGCCAATCGGCGGCCGCCAGCGCGGCGGGGCCCGGCCAACCAGCGTCCGCCGAGTCTTCGG
LT-3	RLATX	ATCCACCACACCTGCCCAACAACACAACTCACAGCGACAACTCACCGCGCAACAACTCCTGTTCCTCATCCACAC
LT-4	RLAT-3'	ATCCAAACCCTCCGGGGGCGCCCGCGCACCACCACCGCCCCTCGCCCCCTCCCGCCCCTCGCCCCCTCCCGCCCC
IE-3	RICP4	AACTCACAGCGACAACTCACCGCGCAACAACTCCTGTTCCTCATCCACACGTCACCGCGCACCTCCCGCTCCTCC
IE-4	R/S22	TGCCGGAAAATGCGCTTCTCCACCGCCTGCCCCTATCCGTGCAGCGACACGTTTCTCCGGCCGTGAGTCCGGTCG
E-18	US2	GCGTCCGTGTTGTGCGTGTATGGGCATGCCCGAGGTCCCAGACGAGCAACCCACATCGCCGGGCCGTGGTCCGCA
L?	US3-5'	CAAACCCCACCCAGCTACCCCAGGCCCCCTTACGACGTCCCATCCGGTGCGGCGTCCGTGTTGTGCGTGTATGGG
E/L?	US3/4	TGTGGCGGTTGGTCCAGACGCGGGCGACGCACACACCCTAGCGTGCGTTACGTGTGCCTGCCGTCCGAACGCGGG
E-19	US5-5'	GGGGGGCTTTGCCGTCCCCCTCGTAGTCGGTGGGCTGTGCGCCGTAGTCCTGGGGGCGGCATGTCTGCTTGAGCT
EL/E/E h	US5/6/7	GCTTCCGACGCCCCCCGTGGACCCCACGACACCCACCCCAACGCCTCCCCTGTTGGTATAGGTCCACGGCCACTG
E-20	US8-5'	ACGCCTCCCCTGTTGGTATAGGTCCACGGCCACTGGCCGGGAGCACCACATAACCGACCGCAGTCCCTGAGTTGG
E-21	US8/9	TGATCGCCTGTCTCCTCGTGGCCGTTCTGTCGGGCGGATTTGGGGCGCTCCTGATGTGGCTGCTCCGCTAAAAGA
E/E/IE h	US10/11/12	CATCGACACGCGCGTCCTTCTTGTCGTCTCTCTTCCCCCCCATCACCCCGCAATTTGCACCCAGCCTTTAACTAC